Skip to content

Add 12 bioinformatics and research MCP servers to community section #2589

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 2 commits into
base: main
Choose a base branch
from

Conversation

QuentinCody
Copy link

@QuentinCody QuentinCody commented Aug 20, 2025

  • Add CIViC MCP server for clinical variant interpretation
  • Add DataCite MCP server for research data and publication metadata
  • Add DGIdb MCP server for drug-gene interaction data
  • Add Entrez MCP server for NCBI biomedical databases
  • Add NCI GDC MCP server for cancer genomic data
  • Add OpenNeuro MCP server for open neuroimaging datasets
  • Add Open Targets MCP server for target-disease associations
  • Add Pharos MCP server for target, drug, and disease information
  • Add RCSB PDB MCP server for 3D protein structures
  • Add UniProt MCP server for protein sequence and functional data
  • Add Wikidata SPARQL MCP server for structured knowledge queries
  • Add ZincBind MCP server for zinc binding sites in proteins

All servers added in alphabetical order following contribution guidelines.

Description

Server Details

  • Server:
  • Changes to:

Motivation and Context

How Has This Been Tested?

Breaking Changes

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)
  • Documentation update

Checklist

  • I have read the MCP Protocol Documentation
  • My changes follows MCP security best practices
  • I have updated the server's README accordingly
  • I have tested this with an LLM client
  • My code follows the repository's style guidelines
  • New and existing tests pass locally
  • I have added appropriate error handling
  • I have documented all environment variables and configuration options

Additional context

- Add CIViC MCP server for clinical variant interpretation
- Add DataCite MCP server for research data and publication metadata
- Add DGIdb MCP server for drug-gene interaction data
- Add Entrez MCP server for NCBI biomedical databases
- Add NCI GDC MCP server for cancer genomic data
- Add OpenNeuro MCP server for open neuroimaging datasets
- Add Open Targets MCP server for target-disease associations
- Add Pharos MCP server for target, drug, and disease information
- Add RCSB PDB MCP server for 3D protein structures
- Add UniProt MCP server for protein sequence and functional data
- Add Wikidata SPARQL MCP server for structured knowledge queries
- Add ZincBind MCP server for zinc binding sites in proteins

All servers added in alphabetical order following contribution guidelines.
@@ -1195,6 +1206,7 @@ A growing set of community-developed and maintained servers demonstrates various
- **[YouTube Video Summarizer](https://github.com/nabid-pf/youtube-video-summarizer-mcp)** - Summarize lengthy youtube videos.
- **[yutu](https://github.com/eat-pray-ai/yutu)** - A fully functional MCP server and CLI for YouTube to automate YouTube operation.
- **[ZapCap](https://github.com/bogdan01m/zapcap-mcp-server)** - MCP server for ZapCap API providing video caption and B-roll generation via natural language
- **[ZincBind](https://github.com/QuentinCody/zincbind-mcp-server)** - Unofficial MCP server for ZincBind, providing access to a comprehensive database of zinc binding sites in proteins, structural coordination data, and metalloproteomics research information.
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Hi @QuentinCody , I noticed that your Readme here still seems to contain placeholder text from Cloudflare?

Copy link
Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

fixed with a new Readme. Thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants