epydemix, the ABC of epidemics

The companion repository to Computational Modeling of Infectious Disease by Chris von Csefalvay

CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.

EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.

Code for the paper: The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout

Estimates of COVID-19 R_t in Real-Time.

A tool to estimate Instantaneous Reproduction Number

Special repository containing the profile directory of JuliaEpi.

epidWaves is a Matlab/Python package to fit multi-wave statistical models to the complex epidemic data.

Special repository hosting the InPhyT website.

Code, text, figures, etc. for reproducing my dissertation proposal, "Impact of Host and Vaccine Characteristics on Immune Responses following Influenza Vaccination".

An Analysis of Lassa Fever Outbreaks in Nigeria using Machine Learning Models and Shapley Values

Python implementation of behavioral-epidemic models for COVID-19

A Real-Time, Data-Driven Infectious Disease Dashboard and Surveillance Application to Monitor the 2022-2023 Global Mpox Outbreak

An Agent-Based Model used to Simulate Rodent Control Strategies for the Control of Periodic Outbreaks of Lassa Fever in Nigeria

Code for the paper: Modeling the interplay between disease spread, behaviors, and disease perception with a data-driven approach

HFMD simulation

Code and data associated with Billings et al., "High dose inactivated influenza vaccine inconsistently improves heterologous antibody responses in an elderly human cohort", JID 2025.

O índice de contágio do COVID-19 regionalizado, por estados, municípios e até bairros, em tempo real, pode apoiar a tomada de decisões do poder público sobre como conter o contágio e como conduzir a retomada da atividade econômica de forma segura.